PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010103346.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
Family Trihelix
Protein Properties Length: 473aa    MW: 53884.2 Da    PI: 6.3018
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010103346.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix77.91.6e-24107207186
        trihelix   1 rWtkqevlaLiearremeerlr.rgk.............lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tsessstcp 80 
                     +Wt+++v+ Li a+ +++++ + +g              +kk++W+ vs++m+e+gf++sp+qC++k+++lnkryk+++++ +k+ +++++++ +
  XP_010103346.1 107 KWTDSMVRYLIMAVYYIGDDGGlEGTdpaakkkpsggllQKKGKWKTVSRAMMEKGFHVSPQQCEDKFNDLNKRYKRVNDILGKGtSCRVVENQS 201
                     7**************999999953335566778899999**********************************************669******* PP

        trihelix  81 yfdqle 86 
                     ++d+++
  XP_010103346.1 202 LLDSMD 207
                     ***997 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138371.3E-21105232No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010629Biological Processnegative regulation of gene expression
GO:1900037Biological Processregulation of cellular response to hypoxia
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 473 aa     Download sequence    Send to blast
MEANGLGGGG LFSAMGSGML GLEMPLQPQQ QNPRHLQHPQ MVGYAHHDPA DQHPQTQPSL  60
KHGYTYGPTS KSKQVALSDE DEAGFGADHD GTNGDGKRKM SPWQRMKWTD SMVRYLIMAV  120
YYIGDDGGLE GTDPAAKKKP SGGLLQKKGK WKTVSRAMME KGFHVSPQQC EDKFNDLNKR  180
YKRVNDILGK GTSCRVVENQ SLLDSMDLTP KMKEEVRKLL NSKHLFFREM CAYHNGGAHQ  240
SPELVFEPSN IHPNQQPYPQ PCFHLKESAQ MVGRQDTEAL KMIKTGSAGE DEEEDDEDDD  300
SDEYDEADED EEADGGSRGQ IGRGHDHDDE DNCERQPAKR PRKEALSGTT QLIQHFRSEI  360
LGVVQDGLRS PWEKKQWLKV RMLQLEEQQV SYQCEAFELE KQRLKWIKFS SKKEREMEKA  420
KFENERRKLE NERMVLIIRQ KELELLDLHH RQNQQQQHSS NKRGGGDPSS ITA
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010103346.10.0hypothetical protein L484_002280
TrEMBLW9RKH80.0W9RKH8_9R
STRINGVIT_08s0007g04180.t011e-160(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF48203457
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10040.12e-75sequence-specific DNA binding transcription factors